Rashid Khan (77), Karan Vasudeva (77) and Pawan Kumar (82) could only manage a total of 20-over 236 and are 32-over for the tournament.
Abhishek Jha, the best performer in the first round, carded a round of 83 on Wednesday.
South Korea continued to lead, opening up a six-shot lead over Chinese Taipei with a two-day total of seven-under.
Japan made a significant jump up the leaderboard to tied third place after their team carded a combined score of three-over 219.
Deccan Herald is on WhatsApp Channels| Join now for Breaking News & Editor's Picks